PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G253200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 549aa    MW: 61778.2 Da    PI: 9.7607
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G253200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-13323407186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  ++  +l+rg+l++++W+ev++++     +g+   ++ +qCk++++ l+k+yk +k   +       st+p++++l+
  Prupe.2G253200.1.p 323 CWSEGATSTLITAWGDRYLQLNRGNLRQNDWKEVADAVnsgLNGGVkaPKTDVQCKNRIDTLKKKYKLEKSKPSP------STWPFYHRLH 407
                         7*************************************999555552278*****************99887775......68******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.824147181IPR002885Pentatricopeptide repeat
PfamPF128546.4E-6177210IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.698182216IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.8E-4185215IPR002885Pentatricopeptide repeat
PfamPF138372.0E-25322409No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MALLGKLPYK PLNSQYILTV AARFFTTQSP NFNTFPDIPT SAYYDDQVNA ANRSRDFDDL  60
PHLLNKRVKD NCFNTTNTFK FITKTDASLS VLNDLCRTLA RSLCVVEMMA RENHGLNACS  120
FHPILNVVME EAWGVVDLMR RLGASPDLTA YNYLLIAYCF FGDLDLTTAV LKRIEEKGMS  180
ADTRTYDALV LGACKVGKVE GALVLLRRMV DDGVPMQLST HVYMIDSLLN ASFYDQAVKF  240
VRSFSGRDTW LNKKNFGSLG YRLIKLKSPV FFLIFRSTPN PSLLPTPKNP AVSLFLHHRP  300
EPNPKPFMHR PTRTRAPGGR DDCWSEGATS TLITAWGDRY LQLNRGNLRQ NDWKEVADAV  360
NSGLNGGVKA PKTDVQCKNR IDTLKKKYKL EKSKPSPSTW PFYHRLHSLI GSSPDAAVST  420
KRKPSIPTLT VKSPDLKPKP PGGSRESSIG CEDGEDCNGD SVRKRRMEAV GLSGGAACRE  480
LAGAILKFGE LYERMENLKQ EQMMELEKQR MEFTKELEFQ RLNMFKDAQV ELEKMKRPKY  540
APCRGKKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9h_A3e-143625442437pentatricopeptide repeat protein dPPR-U8G2
5i9d_A3e-143625942437pentatricopeptide repeat protein dPPR-U8A2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435776.11e-170hypothetical protein CICLE_v10033792mg
TrEMBLD7T4L81e-175D7T4L8_VITVI; Putative uncharacterized protein
STRINGVIT_13s0067g01440.t011e-174(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-60sequence-specific DNA binding transcription factors